PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16537_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 477aa    MW: 54289.7 Da    PI: 9.1039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16537_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039201224123
                                           EEETTTTEEESSHHHHHHHHHH.T CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                           y+C+ Cg+ ++++  L++H +  H
  cra_locus_16537_iso_1_len_1587_ver_3 201 YVCSVCGRKCKTNLALRKHFKQlH 224
                                           9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.4E-6122191IPR029060PIN domain-like
SMARTSM003550.0031201224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907201229IPR007087Zinc finger, C2H2
PROSITE patternPS000280203224IPR007087Zinc finger, C2H2
CDDcd061673.20E-12230355No hitNo description
Gene3DG3DSA:3.40.50.10104.4E-6286350IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
XSFQKLSKVR KSFLPSSLFP LLTVKPTPTA SNCHPKPIKI AMFNSSVTSI EFLGSSPTLC  60
PLPLFQLKIT KSHSLTWPLE PSRPLKSLSI FRQKWLIKAC GTAADKEIDM VRTKEGVYAA  120
KAKKVVVLWD LDNKPPRGPP FQAAMALKKV AQNFGELVDI SAYANRHAFI HLPQWVVEER  180
RERRNLDFLE RKGISAPAEP YVCSVCGRKC KTNLALRKHF KQLHERERQK KLNRMSSLKG  240
KKRQRFKERF IDGNEKYIEA ARSLITPKVG YGLAQELRRA GVFVKTVADK PQAADWALKR  300
QMQHSMSRGI DWLFLVSDDS DFSDMLRRAR EANLGTVVVG DWHRALGRQA DLWVPWNGVE  360
NGEITEEDLM LRRARRGFEG RNSSRFSVSV FDGAVTGEGR VDSVVKELIE EMQFDRAGIS  420
VFSEGEDGSE EDWIRARLGG RGNVHDEVEE SVSEDEEGDY LLDIEYDGEE EDDVHFY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492825.10.0PREDICTED: uncharacterized protein LOC107812283
TrEMBLA0A0V0HYN40.0A0A0V0HYN4_SOLCH; Putative C2H2-like zinc finger protein-like (Fragment)
STRINGVIT_18s0001g10130.t010.0(Vitis vinifera)
STRINGPGSC0003DMT4000038440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518