PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_16537_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 477aa MW: 54289.7 Da PI: 9.1039

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_16537_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	201	224	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ L++H + H cra_locus_16537_iso_1_len_1587_ver_3 201 YVCSVCGRKCKTNLALRKHFKQlH 224 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	4.4E-6	122	191	IPR029060	PIN domain-like
SMART	SM00355	0.0031	201	224	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.907	201	229	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	203	224	IPR007087	Zinc finger, C2H2
CDD	cd06167	3.20E-12	230	355	No hit	No description
Gene3D	G3DSA:3.40.50.1010	4.4E-6	286	350	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
XSFQKLSKVR KSFLPSSLFP LLTVKPTPTA SNCHPKPIKI AMFNSSVTSI EFLGSSPTLC 60 PLPLFQLKIT KSHSLTWPLE PSRPLKSLSI FRQKWLIKAC GTAADKEIDM VRTKEGVYAA 120 KAKKVVVLWD LDNKPPRGPP FQAAMALKKV AQNFGELVDI SAYANRHAFI HLPQWVVEER 180 RERRNLDFLE RKGISAPAEP YVCSVCGRKC KTNLALRKHF KQLHERERQK KLNRMSSLKG 240 KKRQRFKERF IDGNEKYIEA ARSLITPKVG YGLAQELRRA GVFVKTVADK PQAADWALKR 300 QMQHSMSRGI DWLFLVSDDS DFSDMLRRAR EANLGTVVVG DWHRALGRQA DLWVPWNGVE 360 NGEITEEDLM LRRARRGFEG RNSSRFSVSV FDGAVTGEGR VDSVVKELIE EMQFDRAGIS 420 VFSEGEDGSE EDWIRARLGG RGNVHDEVEE SVSEDEEGDY LLDIEYDGEE EDDVHFY

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

XSFQKLSKVR KSFLPSSLFP LLTVKPTPTA SNCHPKPIKI AMFNSSVTSI EFLGSSPTLC  60
PLPLFQLKIT KSHSLTWPLE PSRPLKSLSI FRQKWLIKAC GTAADKEIDM VRTKEGVYAA  120
KAKKVVVLWD LDNKPPRGPP FQAAMALKKV AQNFGELVDI SAYANRHAFI HLPQWVVEER  180
RERRNLDFLE RKGISAPAEP YVCSVCGRKC KTNLALRKHF KQLHERERQK KLNRMSSLKG  240
KKRQRFKERF IDGNEKYIEA ARSLITPKVG YGLAQELRRA GVFVKTVADK PQAADWALKR  300
QMQHSMSRGI DWLFLVSDDS DFSDMLRRAR EANLGTVVVG DWHRALGRQA DLWVPWNGVE  360
NGEITEEDLM LRRARRGFEG RNSSRFSVSV FDGAVTGEGR VDSVVKELIE EMQFDRAGIS  420
VFSEGEDGSE EDWIRARLGG RGNVHDEVEE SVSEDEEGDY LLDIEYDGEE EDDVHFY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016492825.1	0.0	PREDICTED: uncharacterized protein LOC107812283
TrEMBL	A0A0V0HYN4	0.0	A0A0V0HYN4_SOLCH; Putative C2H2-like zinc finger protein-like (Fragment)
STRING	VIT_18s0001g10130.t01	0.0	(Vitis vinifera)
STRING	PGSC0003DMT400003844	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18